Built for medical stores & pharmacies

GST Billing Software Built for Medical Stores & Pharmacies

Track every batch and expiry date, find any medicine by its rack in seconds, and never let a strip expire on the shelf again.

  • GST-compliant invoices with HSN-wise tax slabs, auto-applied across medicines, FMCG and devices
  • Dedicated batch & expiry tracking, down to the individual strip or unit
  • Rack/shelf-level location on every medicine, so staff find it without a search party
  • Expiry Alerts warn you before stock goes bad — not after
  • Multiple firms under one login — manage every branch or brand from one account
Download App
125,000+ businesses₹140Cr+ invoices created4.9 on GoogleISO 9001 Certified
Pharmacist billing a customer at a medical store counter with BillClap

Batch captured

B-2216 · Exp 03/2027

GST invoice shared on WhatsApp

BillClap Research · 2026

What manual billing is actually costing medical stores

₹2.3L cr+

India's pharmacy retail market, FY2025 — a thin-margin, expiry-exposed category where every dead batch hurts.

Industry market research (IMARC / Grand View-style est.)

Up to 40%

billing-time cut medical store retailers report in the first month after switching from manual registers to BillClap.

First-party — BillClap

₹50,000

B2B consignment value above which e-invoicing IRN and e-way bill rules apply to distributor/wholesale medicine orders.

CBIC GST notifications

1.5%

of medicines sold nationally are estimated to end up wasted through expiry and returned to pharma companies.

National press & industry

The cost of manual billing

Every manual register is an expiry loss waiting to happen

Paper ledgers and one-size-fits-all software quietly cost medical store retailers time, tax accuracy, and dead stock. Here is where it hurts most.

Tracing a single batch through a paper stock register is near-impossible when an expiry dispute lands at your counter.

Manual registers hold no batch-level identity

HSN misclassification across medicines, FMCG and devices is one of the most common GST audit flags for pharmacy retailers.

Medicines 5–12%, FMCG/cosmetics 18%, devices higher

Shops without digital billing routinely lose hours each week reconciling manual ledgers before GSTR filing.

Time that belongs on the shop floor

A missed e-invoice or e-way bill deadline on a high-value consignment carries real penalty exposure.

High-value pharma stock moves under tight compliance windows

Why pharmacy retail is different

A chemist counter doesn't sell like a kirana store

A single pharmacy bill can span multiple GST rates at once — most medicines at 5% or 12%, select formulations at 18%, and cosmetics, FMCG or medical devices at yet another slab. Every batch carries its own expiry date, and selling an older batch after a newer one isn't just poor stock rotation — it's dead inventory and a compliance risk.

Generic billing software treats every SKU the way a kirana store treats a packet of biscuits.

Pharmacy retail needs batch memory, expiry foresight, and shelf-level recall — instantly.

Pharmacy racks and counter with thermal printer

From daily headache to done

The six things that slow down every medical store counter — and how BillClap fixes each

The problem

I don't know which batches are close to expiry until they're already dead stock.

Risk: Expiry write-offs eating margin

The BillClap fix · Enterprise Plus

Expiry Alerts auto-track batch expiry dates and remind you before stock goes bad — via WhatsApp/SMS.

Outcome: Return or discount before it's a write-off

The problem

GST differs across medicines, FMCG and devices — my old register just applies one rate.

Risk: GST audit exposure

The BillClap fix

HSN-wise GST auto-applies the correct slab per line item — even on a mixed prescription + FMCG bill.

Outcome: Right slab, every line

The problem

My staff can't find where a specific strip is kept when the counter is busy.

Risk: Slower billing, frustrated walk-ins

The BillClap fix · Enterprise Plus

Rack/Shelf location is a field on every product — search it and know exactly where it sits.

Outcome: Found in seconds, not a shelf-by-shelf hunt

The problem

I have stock across two shops and no idea what's where.

Risk: Blind stock across branches

The BillClap fix · Enterprise Plus

Warehouse/Godown tracking shows exactly which branch holds which batch, down to the shelf.

Outcome: Unit-level location, every branch

The problem

Filing GSTR every month means sending my CA a pile of manual invoices.

Risk: Hours lost before filing

The BillClap fix · Pro Plus onward

Schedule GSTR1 with your CA in one click — no manual invoice bundles, no month-end scramble.

Outcome: One-click to your CA

The problem

I have no idea which categories or brands are actually making me money.

Risk: Guesswork on margins

The BillClap fix

40+ real-time reports, including Profit & Loss by product and by category.

Outcome: Know your real winners

Setup to first batch-tracked bill — under 15 minutes

How BillClap works for a medical store — from day one

Most medical store owners create their first batch-tracked bill within 15 minutes of signing up. No IT setup, no accounting jargon.

STEP 0115 min

Set up your dukaan & catalogue

Add each medicine with batch number, expiry date, HSN, GST rate and rack/shelf location — assigned once, auto-applies forever. Already have an Excel list? Bulk import loads it in one step.

Create your business
No card
Business name
Sharma Medical & General Store
GSTIN
09ABCDE5678F1Z2
Create account
STEP 02<15 sec

Bill in seconds at the POS counter

Search or scan → pick the batch → invoice. Stock, expiry date and GST update automatically. Print thermal or WhatsApp the PDF in one tap.

New sale · POS
INV-0287
Subtotal
₹840
6 items
GST mixed
₹68
auto
Total
₹908
due today
Save & send invoice
STEP 03instant

Send a payment link, get paid

Share a secure payment link over WhatsApp. The moment your customer pays by UPI or card, the receipt entry is created in BillClap automatically — no manual matching.

Payment link
UPI · Cards
To Rohit Sharma₹908
Link sent on WhatsAppPaid
Receipt entry auto-created in BillClap
STEP 04daily

Your Cash Book keeps itself

Every sale, expense and receipt auto-posts to the Day Book and Cash Book. See cash in hand and today's profit without ever touching a paper register.

Day Book — Today
Auto-posting
SALEAnsari Medicos+₹4,120
EXPENSESupplier return pickup−₹250
RECEIPTNair & Sons+₹1,600
Cash in hand
₹31,900
Today's profit
₹3,470
STEP 05month-end

E-way bills, returns & monthly GST

Supplier returns on near-expiry stock link back to the original batch; e-Way Bill / IRN generate for ₹50,000+ dispatches. At month end, GSTR-1 auto-compiles with correct HSN and a clean B2B/B2C split.

GST & e-Way
May
GSTR-1 auto-compiled
e-Way bill generated
Bank reconciliation · 38 matched
GST data ready · CA can review & file

Every bill, payment, cash entry and GST return traces back to one batch-tracked invoice — nothing rebuilt by hand at year-end.

Everything on the counter

Features built for how a medical store actually runs

Every feature below is live in BillClap today. Plan tier noted where relevant.

Batch & Expiry Tracking

Every unit tracked by batch number and expiry date, not just a stock count.

All plans

Rack/Shelf Location Tracking

Know exactly which rack or shelf a medicine sits on, across every branch.

Enterprise Plus

GST/Non-GST Billing

Invoices, estimates & quotations with your branding — A4, A5 or thermal.

All plans

Barcode Generation & Scanning

Generate and scan barcodes for fast, accurate billing at a busy counter.

Enterprise Elite+

E-Way Bill & GSTR-1

One-click e-way bill generation and 40+ GST reports.

Enterprise Elite+

Multiple Firms Management

Run every branch or brand from a single login.

Enterprise Elite+

Cashback / Loyalty Bonus

Reward repeat customers automatically at billing.

Enterprise Elite+

Stop Sale on Zero Inventory

Blocks invoices on out-of-stock items to keep stock accurate.

Enterprise Elite+

Expiry Alerts

Auto-track and remind on batch expiry windows via WhatsApp/SMS, well before the deadline.

Enterprise Plus

Full WhatsApp Integration

Send invoices, bills and expiry reminders directly from your own WhatsApp number.

Enterprise Plus

Party-wise Rate & Last 5 Transactions

Custom pricing per customer, with recent-rate visibility at billing.

Enterprise Plus

Tally Export & Sync

Tally Export (XML) included free; Tally Sync available as an add-on.

Enterprise Plus

POS Billing

A fast, touch-friendly counter screen built for constant walk-in footfall.

Enterprise Elite+

Cash Book & Day Book

Sales, expenses and receipts auto-post — see cash in hand and daily profit at a glance.

Pro Plus+

Payment Gateway & Links

Send a payment link on WhatsApp; when it's paid, the receipt posts automatically.

Enterprise Plus

Low-Stock Alerts

Set a reorder level per medicine and get pinged before a fast-moving SKU runs out.

Enterprise Elite+

Udhaar Khata

Track who owes what, and send gentle payment reminders — your credit register, done digitally.

Pro Plus+

How BillClap compares

Cloud-native and mobile-first, without a desktop licence

Capability
BillClap
Enterprise Elite
TallyVyaparMARG ERP
Cloud + mobile-first (Android app, 9 Indian languages)
Desktop-only

Windows app; mobile via 3rd-party Biz Analyst add-on

Partial

Mobile app free; multi-device sync is a paid upgrade

Desktop-first

Mobile/cloud access sold as a separate SKU

Batch & expiry tracking with proactive alerts

Native, all plans

Partial

Batch/expiry tracking yes; alerts are report-based, not pushed

Has an "Expiring Stocks" widget + notifications

Sends low-stock and expiry alerts natively

Rack/shelf-level medicine location

Enterprise Plus

Not native

Godown/multi-location only, no dedicated rack field

Partial

General stock location; no dedicated rack-level field found

Rack-wise tracking & reports — a genuine MARG strength

Barcode generation + thermal scanning
Partial

Scanning yes; barcode/label generation limited

Partial

Generation gated to Gold/Platinum tier

Partial

Available as a separate paid module

Multiple firms/branches under one login
Partial

Needs Gold edition — ₹67,500 one-time + GST

Partial

Multi-company gated to Gold+ tier

Partial

Multi-branch gated to higher tier, priced per module

E-Way Bill + GSTR-1 reports built in

Core feature, but needs Silver+ — ₹22,500 one-time + GST

Partial

Gold tier only — not on Silver or the free plan

Included

Starting annual price
₹4,499/yr
₹11,299 · 61% off
₹22,500

one-time (Silver) + GST · +₹5,310/yr TSS renewal from Yr 2 · single user, desktop-only

₹4,300–4,353/yr

Desktop Gold · mobile sync sold separately as Combo

₹12,600–25,200

one-time (Silver/Pharmacy vertical) + ₹3,500/yr AMC

Note: Batch/expiry tracking and rack-level location are genuinely mature on Tally, Vyapar and especially MARG (which began as a pharma distribution product) — marked honestly above rather than overstated. BillClap's edge here is unified cloud + mobile access and price, not a feature competitors lack outright. Figures researched July 2026 from vendor pricing pages and authorized reseller listings; re-verify before external use.

Our take: Cloud-native and mobile-first, at close to a fifth of Tally's 3-year cost — no expensive desktop licence, no per-device sync fee, and one login across every branch.

3-year total cost of ownership

Effective cost on BillClap's 3-year plans vs. the closest comparable competitor tier (feature-matched for multi-firm/GST reporting where applicable). Based on July 2026 vendor pricing research.

BillClap Enterprise Elite₹8,999
₹2,999.67/yr effective · 61% off list
BillClap Enterprise Plus₹9,999
₹3,333/yr effective · 67% off list
Tally (Silver, perpetual + TSS)₹37,170
₹12,390/yr effective · single user, desktop-only
Vyapar (Desktop Gold, 3 yrs)₹13,059
₹4,353/yr effective · mobile sync costs extra
MARG ERP (Silver + AMC, 3 yrs)₹19,600
₹6,533/yr effective · Pharmacy vertical priced separately (~₹25,200)

Simple plans that grow with your medical store

All prices exclusive of GST. Lock a longer term, save more.

Pro Plus

Entry level · get billing right

3,599/year
5,49935% off
Start Free Trial

1 User · 1 Business · Unlimited Parties, Invoices & Products

  • Core invoicing, catalogue & basic accounting
  • Batch & expiry tracking
  • Udhaar Khata
  • No GST reports, e-Way Bill or POS billing
★ Best Selling Plan

Enterprise Elite

Most medical stores start here

4,499/year
11,29961% off
Start Free Trial

2 Users · 2 Businesses

  • Everything in Pro Plus, plus:
  • E-Way Bill, GSTR-1 & 40+ reports
  • POS billing, barcode + thermal printing
  • Multiple firms, low-stock alerts, party grouping
  • Loyalty / cashback
  • Expiry Alerts & rack tracking reserved for Enterprise Plus

Enterprise Plus

Top tier · multi-branch & online

4,999/year
14,99967% off
Start Free Trial

3 Users · 2 Businesses · +1 extra user/business at ₹1,299/yr

  • Everything in Enterprise Elite, plus:
  • e-Invoice generation
  • Warehouse/Godown + rack-level location & Expiry Alerts
  • Full WhatsApp integration
  • Digital Commerce (online store, payments, shipping, SSL, SEO)
  • API/ERP integration · phone + dedicated RM support
  • Tally Export (XML) free; Tally Sync add-on at ₹1,299 + taxes/yr

Who this is for

Made for every corner of medical retail

Independent chemist & retail medical stores

Batch & expiry tracking plus fast POS billing at a single busy counter.

Multi-branch pharmacy chains

Warehouse/Godown and rack-level tracking show exactly what's where.

Medical + FMCG/general store combos

Mixed GST slabs auto-applied across medicines, cosmetics and daily FMCG.

Distributors managing multiple firms

Every firm under one login.

Stores running loyalty programs

Auto cashback rewards repeat customers.

Stores managing supplier returns

Expiry Alerts flag near-expiry stock in time to return it, not write it off.

Owners on BillClap

Real dukaans. Real numbers.

Medical store and pharmacy owners across India — from a single counter to a multi-branch chain — running their whole day on BillClap.

Anil Deshmukh
Expiry losses −80%
Expiry Alerts ne time pe return karwa diya. Pehle har mahine stock likhna padta tha.

Anil Deshmukh

Deshmukh Medical · Nagpur

Retail chemist · 1 branch
Farida Ansari
Billing time −45%
Rack location ne counter ki speed badha di. Ab dhoondhna nahi padta.

Farida Ansari

Ansari Medicos · Lucknow

Retail chemist · high footfall
Priya Menon
₹0 in commissions
Digital Dukaan se online orders aane lage, bina kisi commission ke.

Priya Menon

Menon Chemists · Bengaluru

Medical + FMCG combo · online store
Suresh Nair
4 branches, 1 login
Godown-wise stock aur multiple firms ek hi login mein. Ab guesswork zero hai.

Suresh Nair

Nair Pharmacy · Kochi

Multi-branch chain · Enterprise Plus

Buyer's checklist

Before you pick any billing software, ask these seven questions

Here's how BillClap answers each one.

Can it track batch numbers and expiry dates, not just stock counts?

Yes — batch & expiry are fields on every unit, on every plan.

Will it warn me before a batch expires?

Yes — Expiry Alerts on Enterprise Plus, via WhatsApp/SMS.

Can I see exactly where a medicine sits on the shelf?

Yes — Rack/Shelf location tracking on Enterprise Plus.

Will it apply the right GST rate across medicines, FMCG and devices?

Yes — HSN-wise tax slabs auto-apply per line item.

Can I see which branch or godown a batch is sitting in?

Yes — Warehouse/Godown tracking on Enterprise Plus.

Can I send GST filings to my CA without manual work?

Yes — Schedule GSTR1 with CA in one click, from Pro Plus onward.

Can I run more than one pharmacy or firm from one account?

Yes — Multiple Firms Management on Enterprise Elite and above.

Real counters, real results

Expiry Alerts alone paid for the subscription — I stopped losing money on dead stock.

Anil Deshmukh

Deshmukh Medical · Nagpur

Mixed GST rates on my bill used to be a headache. Now it's automatic.

Farida Ansari

Ansari Medicos · Lucknow

My CA gets GSTR1 in one click now — no more chasing me for invoices.

Suresh Nair

Nair Pharmacy · Kochi

Switched from Tally in a day. Didn't expect it to be this smooth.

Rakesh Kulkarni

Kulkarni Chemist · Pune

Digital Dukaan got me online orders without a single rupee in commission.

Priya Menon

Menon Chemists · Bengaluru

Rack location tracking cut my billing time in half during rush hour.

Farhan Ali

Ali Medical Store · Hyderabad

FAQ

The medical store handbook

Type a keyword or pick a category — batch, expiry, rack, GST. Everything a medical store owner asks before switching is one search away.

17 answersUpdated Q3 2026
GST & Compliance

Does BillClap apply different GST rates on the same bill?

Yes. Add the HSN code once when you set up a medicine and the right tax slab applies automatically. A prescription medicine, a cosmetic, and a device on one invoice each get their own correct rate — no manual maths.

GST & Compliance

Can I generate GSTR-1, GSTR-3B and e-Way Bills?

Yes, from Enterprise Elite onward you get e-Way Bill generation, GSTR-1 and 40+ GST reports built in. You can also schedule GSTR-1 to your CA in one click.

GST & Compliance

Is e-Invoice supported?

Yes, e-Invoice generation is available on the Enterprise Plus plan. If e-Invoice is a must-have for your turnover, pick Enterprise Plus.

Batch & Expiry

Does BillClap track medicine batch numbers and expiry dates?

Yes. Batch number and expiry date are captured as a native field on every product, on every plan, not an add-on.

Batch & Expiry

Will I get an alert before medicines expire?

Yes. Expiry Alerts (Enterprise Plus) proactively track batch expiry windows and remind you via WhatsApp/SMS, so you can return or discount stock before it's a write-off.

Batch & Expiry

Can I see which rack or shelf a medicine is on?

Yes. Rack/Shelf location tracking (Enterprise Plus) lets you record exactly where each medicine sits, so staff can find it without searching shelf by shelf.

Batch & Expiry

I have stock in two shops. Can I see what's where?

Yes. Warehouse/Godown tracking on Enterprise Plus shows exactly which branch or godown holds which batch, down to the shelf.

Batch & Expiry

Will it stop me from billing an out-of-stock item?

Yes. Turn on Stop Sale on Zero Inventory (Enterprise Elite+) and BillClap blocks invoices on items that have run out, so your stock stays accurate.

Billing & Payments

Can I share bills on WhatsApp and print on a thermal printer?

Yes. Print A4, A5 or thermal at the counter, and share the invoice on WhatsApp. Full WhatsApp integration from your own number is on Enterprise Plus.

Billing & Payments

Can I send a payment link and get the entry made automatically?

Yes. Send a secure payment link over WhatsApp; the moment your customer pays by UPI or card, the receipt entry is created in BillClap automatically — no manual matching.

Billing & Payments

Does it handle udhaar (credit) accounts?

Yes. Udhaar Khata is available from Pro Plus, so you can track who owes what and send gentle payment reminders.

Setup & Migration

I use Tally today. Can I move my data?

Yes. Tally Export (XML) is included free on Enterprise Plus, and Tally Sync is available as an add-on. Our team helps you get your catalog and parties in quickly.

Setup & Migration

How do I add my whole catalog fast?

Add medicines in bulk by brand, category and HSN code, or one at a time with batch, expiry and rack location. Most stores are billing on the same day they sign up.

Pricing

Which plan is right for a medical store?

Most medical stores start on Enterprise Elite — it has GST reports, POS, barcode and thermal printing. If you need Expiry Alerts, rack-level location or e-Invoice, go with Enterprise Plus.

Pricing

Are the prices inclusive of GST?

All listed prices are exclusive of GST. Lock a 3-year or 5-year term and your effective yearly cost drops significantly.

Support

What support do I get if I'm stuck?

Enterprise Plus includes phone support and a dedicated relationship manager. Every plan gets help in your language — BillClap works in 9 Indian languages.

Support

Does it work on my phone as well as my computer?

Yes. BillClap is cloud-native and mobile-first — bill from the Android app, a tablet, or your PC, and your data is always in sync.

Bill banao, paisa lelo — start today

Join 125,000+ businesses billing smarter. Set up your catalog and print your first GST invoice in minutes.

Book a Demo
125,000+ businesses₹140Cr+ invoices created4.9★ on GoogleISO 9001 Certified

Create GST bill

Desktop and Android app available

BillClap

All-in-one cloud-based business management software. Sell smart, sell online with 0% commission. Manage billing, bahikhata, inventory, and expenses.

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Contact

  • +91-8882468190
  • [email protected]
  • www.billclap.com
  • C-4, Rayos Business Park, Block C, Sector 63, Noida, UP-201301
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